BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB004B06LP1|AL425228
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig872 1028 0.0
3x_Contig1158 456 e-128
>3x_Contig872
Length = 3350
Score = 1028 bits (518), Expect = 0.0
Identities = 534/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Plus
Query: 1 gatcataatttcaatggaccgtttcaatatcgttagccgtaccgacaacgagtaaggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2808 gatcataatttcaatggaccgtttcaatatcgttagccgtaccgacaacgagtaaggtga 2867
Query: 61 taatgggttgtacgaatatgcatgtgttgaagaatttgggaacctcaggagttctctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2868 taatgggttgtacgaatatgcatgtgttgaagaatttgggaacctcaggagttctctaat 2927
Query: 121 atcagaatctgtgaaaatagaaccgttagacgatgacgatatggaagatatagttgatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2928 atcagaatctgtgaaaatagaaccgttagacgatgacgatatggaagatatagttgatat 2987
Query: 181 cgtcgatgatttcctcaattggttaattggttctggctgttcaataatgtcactggtagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 cgtcgatgatttcctcaattggttaattggttctggctgttcaataatgtcactggtagt 3047
Query: 241 cggaagcctcgaaaatgatgctaaactctgtgtatcatcatctgcagaagataactctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3048 cggaagcctcgaaaatgatgctaaactctgtgtatcatcatctgcagaagataactctgc 3107
Query: 301 cgttgaagtgccagtggcggcacgtttaaaacttgaagtggaagacactggtgttgaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3108 cgttgaagtgccagtggcggcacgtttaaaacttgaagtggaagacactggtgttgaggc 3167
Query: 361 tctcgaatgtttttccatcagtgtatgaaacccactacgcgaatcggtagaagcaccaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3168 tctcgaatgtttttccatcagtgtatgaaacccactacgcgaatcggtagaagcaccaat 3227
Query: 421 aaacggcataacaaaggtgcaaaaaaaaacagacaaaatatgggtagataaagctagcgc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3228 aaacggcataacaaaggtgcaaaaaaaaacagacaaaatatgggtagataaaagtagcgc 3287
Query: 481 acttgtgaatcaattaccttacagtagatatactatc-cagatttaaaatcttttgtt 537
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3288 acttgtgaatcaattaccttacagtagatatactatcaaagatttaaaatcttttgtt 3345
>3x_Contig1158
Length = 4503
Score = 456 bits (230), Expect = e-128
Identities = 238/240 (99%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 701 ggtaaccgaataaccaatatatagacctgttctaacgctttt-acagacctatgaaatga 759
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ggtaaccgaataaccaatatatagacctgttctaacgctttttacagacctatgaaatga 60
Query: 760 gtactattatctgtatttgataaaagtaacagttagaaggtagcgactggtaaaaatggg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtactattatctgtatttgataaaagtaacagttagaaggtagcgactggtaaaaatggg 120
Query: 820 ttcaagttatcaaaatccgtcgaacgtttctggttgaagatccaaaatgatatgaaatat 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaagttatcaaaatccgtcgaacgtttctggttgaagatccaaaatgatatgaaatat 180
Query: 880 cagaaaaagcatatatactctctatagtgtaaaaagaaaaataaggcagaaacagcarta 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 cagaaaaagcatatatactctctatagtgtaaaaagaaaaataaggcagaaacagcagta 240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8704
Number of Sequences: 1807
Number of extensions: 8704
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)